TY - JOUR
T1 - The complete mitochondrial genome of the killifish Orestias sp. (Cyprinodontiformes, Cyprinodontidae) from the high Andean range
AU - Quezada-Romegialli, Claudio
AU - Guerrero, Claudia Jimena
AU - Véliz, David
AU - Vila, Irma
N1 - Publisher Copyright:
© 2015 Informa UK Ltd.
PY - 2015/6/29
Y1 - 2015/6/29
N2 - The killifish genus Orestias is endemic to freshwater ecosystems in the High Andes of Peru, Bolivia and Chile. Phylogenetic and phylogeographic studies with partial mitochondrial genes have failed to resolve relationship among species, needing more comprehensive approaches. In this study, we described the complete mitochondrial genome of Orestias sp. from Lirima, northern Chile, with the aim to provide useful data for phylogenetic purposes and species delimitation. The mitochondrial genome was assembled with 2.6 million of reads obtained through an Ion Torrent (chip 318) sequencer. The circular sequence of 16,617 bp showed the following nucleotide composition: A, 26.7%, C, 27.1%, G, 17.0%, and T, 29.2%. Gene composition and structure were similar to other fish sequences available, and comprised 13 protein-coding genes, 12S and 16S rRNA, 22 tRNA genes, and a control region.
AB - The killifish genus Orestias is endemic to freshwater ecosystems in the High Andes of Peru, Bolivia and Chile. Phylogenetic and phylogeographic studies with partial mitochondrial genes have failed to resolve relationship among species, needing more comprehensive approaches. In this study, we described the complete mitochondrial genome of Orestias sp. from Lirima, northern Chile, with the aim to provide useful data for phylogenetic purposes and species delimitation. The mitochondrial genome was assembled with 2.6 million of reads obtained through an Ion Torrent (chip 318) sequencer. The circular sequence of 16,617 bp showed the following nucleotide composition: A, 26.7%, C, 27.1%, G, 17.0%, and T, 29.2%. Gene composition and structure were similar to other fish sequences available, and comprised 13 protein-coding genes, 12S and 16S rRNA, 22 tRNA genes, and a control region.
KW - Altiplano
KW - Freshwater fish
KW - NGS
KW - Next-generation sequencing
UR - https://www.scopus.com/pages/publications/85008311794
U2 - 10.3109/19401736.2015.1053119
DO - 10.3109/19401736.2015.1053119
M3 - Article
C2 - 26119115
AN - SCOPUS:85008311794
SN - 1940-1736
VL - 27
SP - 2480
EP - 2481
JO - Mitochondrial DNA
JF - Mitochondrial DNA
IS - 4
ER -